282 lines
7.6 KiB
C
282 lines
7.6 KiB
C
|
/* lil-gp Genetic Programming System, version 1.0, 11 July 1995
|
||
|
* Copyright (C) 1995 Michigan State University
|
||
|
*
|
||
|
* This program is free software; you can redistribute it and/or modify
|
||
|
* it under the terms of version 2 of the GNU General Public License as
|
||
|
* published by the Free Software Foundation.
|
||
|
*
|
||
|
* This program is distributed in the hope that it will be useful,
|
||
|
* but WITHOUT ANY WARRANTY; without even the implied warranty of
|
||
|
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
|
||
|
* GNU General Public License for more details.
|
||
|
*
|
||
|
* You should have received a copy of the GNU General Public License
|
||
|
* along with this program; if not, write to the Free Software
|
||
|
* Foundation, Inc., 675 Mass Ave, Cambridge, MA 02139, USA.
|
||
|
*
|
||
|
* Douglas Zongker (zongker@isl.cps.msu.edu)
|
||
|
* Dr. Bill Punch (punch@isl.cps.msu.edu)
|
||
|
*
|
||
|
* Computer Science Department
|
||
|
* A-714 Wells Hall
|
||
|
* Michigan State University
|
||
|
* East Lansing, Michigan 48824
|
||
|
* USA
|
||
|
*
|
||
|
*/
|
||
|
|
||
|
#include <lilgp.h>
|
||
|
|
||
|
/* the table listing selection method names and the functions which
|
||
|
create selection contexts. extend this table whenever you add a
|
||
|
new selection method. {NULL,NULL} marks the end of the table. */
|
||
|
|
||
|
select_method select_method_table[] =
|
||
|
{ { "fitness", select_afit_context },
|
||
|
{ "fitness_overselect", select_afit_overselect_context },
|
||
|
{ "tournament", select_tournament_context },
|
||
|
{ "inverse_fitness", select_inverse_afit_context },
|
||
|
{ "best", select_best_context },
|
||
|
{ "worst", select_worst_context },
|
||
|
{ "random", select_random_context },
|
||
|
{ "boltzman", select_boltzman_context },
|
||
|
{ "sigma", select_sigma_context },
|
||
|
{ NULL, NULL } };
|
||
|
|
||
|
|
||
|
|
||
|
/* context_func_ptr()
|
||
|
*
|
||
|
* looks for the named string in the selection method table
|
||
|
* and returns the corresponding context method.
|
||
|
*/
|
||
|
|
||
|
select_context_func_ptr get_select_context ( char *string )
|
||
|
{
|
||
|
int i, j, k;
|
||
|
char *name;
|
||
|
select_method *s = select_method_table;
|
||
|
|
||
|
/* pull off the name section of the string. */
|
||
|
for ( i = 0; string[i] != 0 && string[i] != ','
|
||
|
&& string[i] != '\n'; ++i );
|
||
|
name = (char *)MALLOC ( i+1 );
|
||
|
k = 0;
|
||
|
for ( j = 0; j < i; ++j )
|
||
|
if ( !isspace(string[j]) )
|
||
|
name[k++] = string[j];
|
||
|
name[k] = 0;
|
||
|
|
||
|
/* search the table. */
|
||
|
while ( s->name != NULL )
|
||
|
{
|
||
|
if ( strcmp ( s->name, name ) == 0 )
|
||
|
break;
|
||
|
++s;
|
||
|
}
|
||
|
FREE ( name );
|
||
|
|
||
|
/* return the function (NULL if it wasn't found). */
|
||
|
return s->func;
|
||
|
}
|
||
|
|
||
|
/* exists_select_method()
|
||
|
*
|
||
|
* returns 1 if the named selection method exists, 0 otherwise.
|
||
|
*/
|
||
|
|
||
|
int exists_select_method ( char *string )
|
||
|
{
|
||
|
return ( get_select_context ( string ) != NULL );
|
||
|
}
|
||
|
|
||
|
/* free_o_rama()
|
||
|
*
|
||
|
* frees the argv-style array produced by parse_o_rama().
|
||
|
*/
|
||
|
|
||
|
void free_o_rama ( int j, char ***argv )
|
||
|
{
|
||
|
int i;
|
||
|
|
||
|
for ( i = 0; i < j; ++i )
|
||
|
FREE ( (*argv)[i] );
|
||
|
FREE ( *argv );
|
||
|
*argv = NULL;
|
||
|
}
|
||
|
|
||
|
/* parse_o_rama()
|
||
|
*
|
||
|
* breaks a string into an argv-style array. field delimiters
|
||
|
* are newlines, commas, equal-signs, NULLS, and open-parentheses.
|
||
|
* no field breaking occurs within a pair of nested parentheses.
|
||
|
* any whitespace is removed from the string. any zero-length
|
||
|
* fields are ignored.
|
||
|
*
|
||
|
* currently seg faults parentheses are mismatched. this should
|
||
|
* be fixed.
|
||
|
*/
|
||
|
|
||
|
int parse_o_rama ( char *string, char ***argv )
|
||
|
{
|
||
|
int i, j;
|
||
|
char *p, *m, *o;
|
||
|
int parendepth = 0;
|
||
|
char **fargv;
|
||
|
int nonblank = 0;
|
||
|
|
||
|
/** this is not commented because it sorely needs to be
|
||
|
rewritten. **/
|
||
|
|
||
|
/** pass through the string counting fields **/
|
||
|
for ( j = 1, p = string; *p; ++p )
|
||
|
{
|
||
|
j += (parendepth==0)&&(*p=='\n'||*p=='='||*p==','||*p==0||*p=='(');
|
||
|
if ( *p == '(' )
|
||
|
++parendepth;
|
||
|
else if ( *p == ')' )
|
||
|
{
|
||
|
--parendepth;
|
||
|
if ( parendepth == 0 )
|
||
|
++j;
|
||
|
else if ( parendepth < 0 )
|
||
|
return -1;
|
||
|
}
|
||
|
}
|
||
|
|
||
|
if ( *string == 0 )
|
||
|
j = 0;
|
||
|
|
||
|
/* allocate space for the fields. */
|
||
|
fargv = (char **)MALLOC ( j * sizeof ( char * ) );
|
||
|
p = m = string;
|
||
|
parendepth = 0;
|
||
|
for ( i = 0; i < j; ++i )
|
||
|
{
|
||
|
while ( parendepth || ( *p && *p != '=' && *p != ',' && *p != '\n'
|
||
|
&& *p != '(' && *p != ')' ) )
|
||
|
{
|
||
|
if ( *p == '(' )
|
||
|
++parendepth;
|
||
|
else if ( *p == ')' )
|
||
|
{
|
||
|
--parendepth;
|
||
|
if ( !parendepth )
|
||
|
--p;
|
||
|
}
|
||
|
++p;
|
||
|
}
|
||
|
if ( *p == '(' )
|
||
|
++parendepth;
|
||
|
fargv[i] = (char *)MALLOC ( (p-m+1) * sizeof ( char ) );
|
||
|
o = fargv[i];
|
||
|
while ( m < p )
|
||
|
{
|
||
|
if ( !isspace(*m) )
|
||
|
*(o++) = *m;
|
||
|
++m;
|
||
|
}
|
||
|
*o = 0;
|
||
|
if ( fargv[i][0] != 0 )
|
||
|
++nonblank;
|
||
|
++p;
|
||
|
++m;
|
||
|
}
|
||
|
|
||
|
*argv = (char **)MALLOC ( nonblank * sizeof ( char * ) );
|
||
|
nonblank = 0;
|
||
|
#ifdef DEBUG
|
||
|
printf ( "parse_o_rama: %d fields\n", nonblank );
|
||
|
#endif
|
||
|
for ( i = 0; i < j; ++i )
|
||
|
{
|
||
|
if ( fargv[i][0] )
|
||
|
{
|
||
|
#ifdef DEBUG
|
||
|
printf ( " [%s]\n", fargv[i] );
|
||
|
#endif
|
||
|
(*argv)[nonblank++] = fargv[i];
|
||
|
}
|
||
|
else
|
||
|
FREE ( fargv[i] );
|
||
|
}
|
||
|
FREE ( fargv );
|
||
|
|
||
|
return nonblank;
|
||
|
}
|
||
|
|
||
|
/* rev_ind_compare()
|
||
|
*
|
||
|
* comparison function for sorting a reverse_index table by increasing
|
||
|
* fitness.
|
||
|
*/
|
||
|
|
||
|
int rev_ind_compare ( const void *a, const void *b )
|
||
|
{
|
||
|
if ( ((reverse_index *)a)->fitness > ((reverse_index *)b)->fitness )
|
||
|
return 1;
|
||
|
else if ( ((reverse_index *)a)->fitness < ((reverse_index *)b)->fitness )
|
||
|
return -1;
|
||
|
else
|
||
|
return 0;
|
||
|
}
|
||
|
|
||
|
/* select_interval()
|
||
|
*
|
||
|
* for selection methods which can be expressed as randomly selecting an
|
||
|
* individual, where each individual has some fixed probability of
|
||
|
* being selected, this efficiently does the selection.
|
||
|
*
|
||
|
* the selection_context's data field must point to an interval_data
|
||
|
* structure, which contains (essentially) a list of consecutive intervals
|
||
|
* and which individuals they correspond to. this function chooses a random
|
||
|
* number in the whole range of the intervals and uses binary search to
|
||
|
* locate which interval that falls in, returning the corresponding
|
||
|
* index.
|
||
|
*/
|
||
|
|
||
|
int select_interval ( sel_context *sc )
|
||
|
{
|
||
|
double rval;
|
||
|
int middle;
|
||
|
interval_data *id = sc->data;
|
||
|
int low = 0, high = id->count;
|
||
|
|
||
|
rval = random_double(&globrand) * id->total;
|
||
|
|
||
|
#ifdef DEBUG_INTERVAL
|
||
|
printf ( "random value is %.6f (%.6f)\n", rval, id->total );
|
||
|
#endif
|
||
|
|
||
|
while ( low < high-1 )
|
||
|
{
|
||
|
#ifdef DEBUG_INTERVAL
|
||
|
printf ( "current range is %d (%.6f) to %d (%.6f)\n",
|
||
|
low, id->ri[low].fitness,
|
||
|
high, id->ri[high].fitness );
|
||
|
#endif
|
||
|
|
||
|
middle = (low+high)/2;
|
||
|
if ( rval >= id->ri[middle].fitness )
|
||
|
low = middle;
|
||
|
else
|
||
|
high = middle;
|
||
|
}
|
||
|
|
||
|
#ifdef DEBUG_INTERVAL
|
||
|
printf ( "selected value %d (%.6f)\n", high,
|
||
|
id->ri[high].fitness );
|
||
|
#endif
|
||
|
|
||
|
if ( id->ri[high].index == -1 )
|
||
|
{
|
||
|
/* this shouldn't ever happen either, but I'm nervous about
|
||
|
off-by-one errors on binary searches. */
|
||
|
fprintf ( stderr, "afitness select misfired.\n" );
|
||
|
}
|
||
|
|
||
|
return id->ri[high].index;
|
||
|
|
||
|
}
|
||
|
|