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Brett 2025-04-17 17:45:32 -04:00
parent 29d8efe18f
commit dcefa93d29
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<option name="/Default/CodeInspection/Highlighting/InspectionSeverities/=CppRedundantInlineSpecifier/@EntryIndexedValue" value="HINT" type="string" />
<option name="/Default/CodeInspection/Highlighting/InspectionSeverities/=CppRedundantLambdaParameterList/@EntryIndexedValue" value="HINT" type="string" />
<option name="/Default/CodeInspection/Highlighting/InspectionSeverities/=CppRedundantMemberInitializer/@EntryIndexedValue" value="SUGGESTION" type="string" />
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<option name="/Default/CodeInspection/Highlighting/InspectionSeverities/=CppRedundantParentheses/@EntryIndexedValue" value="HINT" type="string" />
<option name="/Default/CodeInspection/Highlighting/InspectionSeverities/=CppRedundantQualifier/@EntryIndexedValue" value="HINT" type="string" />
<option name="/Default/CodeInspection/Highlighting/InspectionSeverities/=CppRedundantQualifierADL/@EntryIndexedValue" value="DO_NOT_SHOW" type="string" /> <option name="/Default/CodeInspection/Highlighting/InspectionSeverities/=CppRedundantQualifierADL/@EntryIndexedValue" value="DO_NOT_SHOW" type="string" />
<option name="/Default/CodeInspection/Highlighting/InspectionSeverities/=CppRedundantStaticSpecifierOnMemberAllocationFunction/@EntryIndexedValue" value="HINT" type="string" />
<option name="/Default/CodeInspection/Highlighting/InspectionSeverities/=CppRedundantStaticSpecifierOnThreadLocalLocalVariable/@EntryIndexedValue" value="HINT" type="string" />
<option name="/Default/CodeInspection/Highlighting/InspectionSeverities/=CppRedundantTemplateArguments/@EntryIndexedValue" value="HINT" type="string" />
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<option name="/Default/CodeInspection/Highlighting/InspectionSeverities/=CppRedundantZeroInitializerInAggregateInitialization/@EntryIndexedValue" value="SUGGESTION" type="string" />
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<option name="/Default/CodeInspection/Highlighting/InspectionSeverities/=CppReplaceMemsetWithZeroInitialization/@EntryIndexedValue" value="SUGGESTION" type="string" />
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<option name="/Default/CodeInspection/Highlighting/InspectionSeverities/=CppReturnNoValueInNonVoidFunction/@EntryIndexedValue" value="WARNING" type="string" />
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<option name="/Default/CodeInspection/Highlighting/InspectionSeverities/=CppSomeObjectMembersMightNotBeInitialized/@EntryIndexedValue" value="WARNING" type="string" />
<option name="/Default/CodeInspection/Highlighting/InspectionSeverities/=CppSpecialFunctionWithoutNoexceptSpecification/@EntryIndexedValue" value="WARNING" type="string" />
<option name="/Default/CodeInspection/Highlighting/InspectionSeverities/=CppStaticAssertFailure/@EntryIndexedValue" value="ERROR" type="string" />
<option name="/Default/CodeInspection/Highlighting/InspectionSeverities/=CppStaticDataMemberInUnnamedStruct/@EntryIndexedValue" value="WARNING" type="string" />
<option name="/Default/CodeInspection/Highlighting/InspectionSeverities/=CppStaticSpecifierOnAnonymousNamespaceMember/@EntryIndexedValue" value="SUGGESTION" type="string" />
<option name="/Default/CodeInspection/Highlighting/InspectionSeverities/=CppStringLiteralToCharPointerConversion/@EntryIndexedValue" value="WARNING" type="string" />
<option name="/Default/CodeInspection/Highlighting/InspectionSeverities/=CppTabsAreDisallowed/@EntryIndexedValue" value="DO_NOT_SHOW" type="string" />
<option name="/Default/CodeInspection/Highlighting/InspectionSeverities/=CppTemplateArgumentsCanBeDeduced/@EntryIndexedValue" value="HINT" type="string" />
<option name="/Default/CodeInspection/Highlighting/InspectionSeverities/=CppTemplateParameterNeverUsed/@EntryIndexedValue" value="HINT" type="string" />
<option name="/Default/CodeInspection/Highlighting/InspectionSeverities/=CppTemplateParameterShadowing/@EntryIndexedValue" value="WARNING" type="string" />
<option name="/Default/CodeInspection/Highlighting/InspectionSeverities/=CppThrowExpressionCanBeReplacedWithRethrow/@EntryIndexedValue" value="WARNING" type="string" />
<option name="/Default/CodeInspection/Highlighting/InspectionSeverities/=CppTooWideScope/@EntryIndexedValue" value="SUGGESTION" type="string" />
<option name="/Default/CodeInspection/Highlighting/InspectionSeverities/=CppTooWideScopeInitStatement/@EntryIndexedValue" value="HINT" type="string" />
<option name="/Default/CodeInspection/Highlighting/InspectionSeverities/=CppTypeAliasNeverUsed/@EntryIndexedValue" value="WARNING" type="string" />
<option name="/Default/CodeInspection/Highlighting/InspectionSeverities/=CppUninitializedDependentBaseClass/@EntryIndexedValue" value="WARNING" type="string" />
<option name="/Default/CodeInspection/Highlighting/InspectionSeverities/=CppUninitializedNonStaticDataMember/@EntryIndexedValue" value="WARNING" type="string" />
<option name="/Default/CodeInspection/Highlighting/InspectionSeverities/=CppUnionMemberOfReferenceType/@EntryIndexedValue" value="WARNING" type="string" />
<option name="/Default/CodeInspection/Highlighting/InspectionSeverities/=CppUnmatchedPragmaEndRegionDirective/@EntryIndexedValue" value="WARNING" type="string" />
<option name="/Default/CodeInspection/Highlighting/InspectionSeverities/=CppUnmatchedPragmaRegionDirective/@EntryIndexedValue" value="WARNING" type="string" />
<option name="/Default/CodeInspection/Highlighting/InspectionSeverities/=CppUnnamedNamespaceInHeaderFile/@EntryIndexedValue" value="WARNING" type="string" />
<option name="/Default/CodeInspection/Highlighting/InspectionSeverities/=CppUnnecessaryWhitespace/@EntryIndexedValue" value="DO_NOT_SHOW" type="string" />
<option name="/Default/CodeInspection/Highlighting/InspectionSeverities/=CppUnsignedZeroComparison/@EntryIndexedValue" value="WARNING" type="string" />
<option name="/Default/CodeInspection/Highlighting/InspectionSeverities/=CppUnusedIncludeDirective/@EntryIndexedValue" value="WARNING" type="string" />
<option name="/Default/CodeInspection/Highlighting/InspectionSeverities/=CppUseAlgorithmWithCount/@EntryIndexedValue" value="SUGGESTION" type="string" />
<option name="/Default/CodeInspection/Highlighting/InspectionSeverities/=CppUseAssociativeContains/@EntryIndexedValue" value="SUGGESTION" type="string" />
<option name="/Default/CodeInspection/Highlighting/InspectionSeverities/=CppUseAuto/@EntryIndexedValue" value="HINT" type="string" />
<option name="/Default/CodeInspection/Highlighting/InspectionSeverities/=CppUseAutoForNumeric/@EntryIndexedValue" value="HINT" type="string" />
<option name="/Default/CodeInspection/Highlighting/InspectionSeverities/=CppUseElementsView/@EntryIndexedValue" value="SUGGESTION" type="string" />
<option name="/Default/CodeInspection/Highlighting/InspectionSeverities/=CppUseEraseAlgorithm/@EntryIndexedValue" value="SUGGESTION" type="string" />
<option name="/Default/CodeInspection/Highlighting/InspectionSeverities/=CppUseFamiliarTemplateSyntaxForGenericLambdas/@EntryIndexedValue" value="SUGGESTION" type="string" />
<option name="/Default/CodeInspection/Highlighting/InspectionSeverities/=CppUseRangeAlgorithm/@EntryIndexedValue" value="SUGGESTION" type="string" />
<option name="/Default/CodeInspection/Highlighting/InspectionSeverities/=CppUseStdSize/@EntryIndexedValue" value="SUGGESTION" type="string" />
<option name="/Default/CodeInspection/Highlighting/InspectionSeverities/=CppUseStructuredBinding/@EntryIndexedValue" value="HINT" type="string" />
<option name="/Default/CodeInspection/Highlighting/InspectionSeverities/=CppUseTypeTraitAlias/@EntryIndexedValue" value="SUGGESTION" type="string" />
<option name="/Default/CodeInspection/Highlighting/InspectionSeverities/=CppUserDefinedLiteralSuffixDoesNotStartWithUnderscore/@EntryIndexedValue" value="WARNING" type="string" />
<option name="/Default/CodeInspection/Highlighting/InspectionSeverities/=CppUsingResultOfAssignmentAsCondition/@EntryIndexedValue" value="WARNING" type="string" />
<option name="/Default/CodeInspection/Highlighting/InspectionSeverities/=CppVariableCanBeMadeConstexpr/@EntryIndexedValue" value="SUGGESTION" type="string" />
<option name="/Default/CodeInspection/Highlighting/InspectionSeverities/=CppVirtualFunctionCallInsideCtor/@EntryIndexedValue" value="WARNING" type="string" />
<option name="/Default/CodeInspection/Highlighting/InspectionSeverities/=CppVirtualFunctionInFinalClass/@EntryIndexedValue" value="WARNING" type="string" />
<option name="/Default/CodeInspection/Highlighting/InspectionSeverities/=CppVolatileParameterInDeclaration/@EntryIndexedValue" value="SUGGESTION" type="string" />
<option name="/Default/CodeInspection/Highlighting/InspectionSeverities/=CppWarningDirective/@EntryIndexedValue" value="WARNING" type="string" />
<option name="/Default/CodeInspection/Highlighting/InspectionSeverities/=CppWrongIncludesOrder/@EntryIndexedValue" value="HINT" type="string" />
<option name="/Default/CodeInspection/Highlighting/InspectionSeverities/=CppWrongSlashesInIncludeDirective/@EntryIndexedValue" value="HINT" type="string" />
<option name="/Default/CodeInspection/Highlighting/InspectionSeverities/=CppZeroConstantCanBeReplacedWithNullptr/@EntryIndexedValue" value="SUGGESTION" type="string" />
<option name="/Default/CodeInspection/Highlighting/InspectionSeverities/=CppZeroValuedExpressionUsedAsNullPointer/@EntryIndexedValue" value="WARNING" type="string" />
<option name="/Default/CodeInspection/Highlighting/InspectionSeverities/=IdentifierTypo/@EntryIndexedValue" value="DO_NOT_SHOW" type="string" />
<option name="/Default/CodeInspection/Highlighting/InspectionSeverities/=IfStdIsConstantEvaluatedCanBeReplaced/@EntryIndexedValue" value="SUGGESTION" type="string" />
<option name="/Default/CodeInspection/Highlighting/InspectionSeverities/=StdIsConstantEvaluatedWillAlwaysEvaluateToConstant/@EntryIndexedValue" value="WARNING" type="string" />
<option name="/Default/CodeInspection/Highlighting/InspectionSeverities/=StringLiteralTypo/@EntryIndexedValue" value="DO_NOT_SHOW" type="string" />
<option name="/Default/CodeStyle/Naming/CppNaming/Rules/=Class_0020and_0020struct_0020fields/@EntryIndexedValue" value="&lt;NamingElement Priority=&quot;11&quot;&gt;&lt;Descriptor Static=&quot;Indeterminate&quot; Constexpr=&quot;Indeterminate&quot; Const=&quot;Indeterminate&quot; Volatile=&quot;Indeterminate&quot; Accessibility=&quot;NOT_APPLICABLE&quot;&gt;&lt;type Name=&quot;class field&quot; /&gt;&lt;type Name=&quot;struct field&quot; /&gt;&lt;/Descriptor&gt;&lt;Policy Inspect=&quot;True&quot; WarnAboutPrefixesAndSuffixes=&quot;False&quot; Prefix=&quot;m_&quot; Suffix=&quot;&quot; Style=&quot;aa_bb&quot; /&gt;&lt;/NamingElement&gt;" type="string" /> <option name="/Default/CodeStyle/Naming/CppNaming/Rules/=Class_0020and_0020struct_0020fields/@EntryIndexedValue" value="&lt;NamingElement Priority=&quot;11&quot;&gt;&lt;Descriptor Static=&quot;Indeterminate&quot; Constexpr=&quot;Indeterminate&quot; Const=&quot;Indeterminate&quot; Volatile=&quot;Indeterminate&quot; Accessibility=&quot;NOT_APPLICABLE&quot;&gt;&lt;type Name=&quot;class field&quot; /&gt;&lt;type Name=&quot;struct field&quot; /&gt;&lt;/Descriptor&gt;&lt;Policy Inspect=&quot;True&quot; WarnAboutPrefixesAndSuffixes=&quot;False&quot; Prefix=&quot;m_&quot; Suffix=&quot;&quot; Style=&quot;aa_bb&quot; /&gt;&lt;/NamingElement&gt;" type="string" />
<option name="/Default/CodeStyle/Naming/CppNaming/Rules/=Enums/@EntryIndexedValue" value="&lt;NamingElement Priority=&quot;3&quot;&gt;&lt;Descriptor Static=&quot;Indeterminate&quot; Constexpr=&quot;Indeterminate&quot; Const=&quot;Indeterminate&quot; Volatile=&quot;Indeterminate&quot; Accessibility=&quot;NOT_APPLICABLE&quot;&gt;&lt;type Name=&quot;enum&quot; /&gt;&lt;/Descriptor&gt;&lt;Policy Inspect=&quot;True&quot; WarnAboutPrefixesAndSuffixes=&quot;False&quot; Prefix=&quot;&quot; Suffix=&quot;&quot; Style=&quot;AA_BB&quot; /&gt;&lt;/NamingElement&gt;" type="string" /> <option name="/Default/CodeStyle/Naming/CppNaming/Rules/=Enums/@EntryIndexedValue" value="&lt;NamingElement Priority=&quot;3&quot;&gt;&lt;Descriptor Static=&quot;Indeterminate&quot; Constexpr=&quot;Indeterminate&quot; Const=&quot;Indeterminate&quot; Volatile=&quot;Indeterminate&quot; Accessibility=&quot;NOT_APPLICABLE&quot;&gt;&lt;type Name=&quot;enum&quot; /&gt;&lt;/Descriptor&gt;&lt;Policy Inspect=&quot;True&quot; WarnAboutPrefixesAndSuffixes=&quot;False&quot; Prefix=&quot;&quot; Suffix=&quot;&quot; Style=&quot;AA_BB&quot; /&gt;&lt;/NamingElement&gt;" type="string" />
</component> </component>

2
CMakeLists.txt
View File

@ -27,7 +27,7 @@ macro(compile_options target_name)
sanitizers(${target_name}) sanitizers(${target_name})
endmacro() endmacro()
project(blt-gp VERSION 0.5.8) project(blt-gp VERSION 0.5.9)
include(CTest) include(CTest)

4
examples/rice_classification.h
View File

@ -116,8 +116,8 @@ namespace blt::gp::example
mutation_sel = &sel; mutation_sel = &sel;
if (reproduction_sel == nullptr) if (reproduction_sel == nullptr)
reproduction_sel = &sel; reproduction_sel = &sel;
program.generate_population(program.get_typesystem().get_type<float>().id(), fitness_function_ref, *crossover_sel, *mutation_sel, program.generate_initial_population(program.get_typesystem().get_type<float>().id());
*reproduction_sel); program.setup_generational_evaluation(fitness_function_ref, *crossover_sel, *mutation_sel, *reproduction_sel);
} }
void print_best(const size_t amount = 3) void print_best(const size_t amount = 3)

4
examples/src/rice_classification.cpp
View File

@ -21,7 +21,7 @@
#include <blt/gp/program.h> #include <blt/gp/program.h>
#include <blt/profiling/profiler_v2.h> #include <blt/profiling/profiler_v2.h>
#include <blt/gp/tree.h> #include <blt/gp/tree.h>
#include <blt/std/logging.h> #include <blt/logging/logging.h>
#include <blt/format/format.h> #include <blt/format/format.h>
#include <blt/parse/argparse.h> #include <blt/parse/argparse.h>
#include <iostream> #include <iostream>
@ -191,7 +191,7 @@ void blt::gp::example::rice_classification_t::load_rice_data(const std::string_v
training_cases.insert(training_cases.end(), c.begin(), c.end()); training_cases.insert(training_cases.end(), c.begin(), c.end());
training_cases.insert(training_cases.end(), o.begin(), o.end()); training_cases.insert(training_cases.end(), o.begin(), o.end());
std::shuffle(training_cases.begin(), training_cases.end(), program.get_random()); std::shuffle(training_cases.begin(), training_cases.end(), program.get_random());
BLT_INFO("Created testing set of size %ld, training set is of size %ld", testing_cases.size(), training_cases.size()); BLT_INFO("Created testing set of size {}, training set is of size {}", testing_cases.size(), training_cases.size());
} }
blt::gp::confusion_matrix_t blt::gp::example::rice_classification_t::test_individual(const individual_t& individual) const blt::gp::confusion_matrix_t blt::gp::example::rice_classification_t::test_individual(const individual_t& individual) const

146
include/blt/gp/program.h
View File

@ -175,14 +175,16 @@ namespace blt::gp
"(that is all input types are terminals) for return type " + std::to_string(return_type)).c_str()); "(that is all input types are terminals) for return type " + std::to_string(return_type)).c_str());
} }
std::sort(ordered_terminals.begin(), ordered_terminals.end(), [](const auto& a, const auto& b) { std::sort(ordered_terminals.begin(), ordered_terminals.end(), [](const auto& a, const auto& b)
{
return a.second > b.second; return a.second > b.second;
}); });
auto first_size = *ordered_terminals.begin(); auto first_size = *ordered_terminals.begin();
auto iter = ordered_terminals.begin(); auto iter = ordered_terminals.begin();
while (++iter != ordered_terminals.end() && iter->second == first_size.second) while (++iter != ordered_terminals.end() && iter->second == first_size.second)
{} {
}
ordered_terminals.erase(iter, ordered_terminals.end()); ordered_terminals.erase(iter, ordered_terminals.end());
@ -238,17 +240,20 @@ namespace blt::gp
meta.argc = info.argc; meta.argc = info.argc;
storage.operator_metadata.push_back(meta); storage.operator_metadata.push_back(meta);
storage.print_funcs.push_back([&op](std::ostream& out, stack_allocator& stack) { storage.print_funcs.push_back([&op](std::ostream& out, stack_allocator& stack)
{
if constexpr (blt::meta::is_streamable_v<Return>) if constexpr (blt::meta::is_streamable_v<Return>)
{ {
out << stack.from<Return>(0); out << stack.from<Return>(0);
(void) (op); // remove warning (void)(op); // remove warning
} else }
else
{ {
out << "[Printing Value on '" << (op.get_name() ? *op.get_name() : "") << "' Not Supported!]"; out << "[Printing Value on '" << (op.get_name() ? *op.get_name() : "") << "' Not Supported!]";
} }
}); });
storage.destroy_funcs.push_back([](const detail::destroy_t type, u8* data) { storage.destroy_funcs.push_back([](const detail::destroy_t type, u8* data)
{
switch (type) switch (type)
{ {
case detail::destroy_t::PTR: case detail::destroy_t::PTR:
@ -287,7 +292,8 @@ namespace blt::gp
* *
* @param seed * @param seed
*/ */
explicit gp_program(blt::u64 seed): seed_func([seed] { explicit gp_program(blt::u64 seed): seed_func([seed]
{
return seed; return seed;
}) })
{ {
@ -295,7 +301,8 @@ namespace blt::gp
set_config(config); set_config(config);
} }
explicit gp_program(blt::u64 seed, const prog_config_t& config): seed_func([seed] { explicit gp_program(blt::u64 seed, const prog_config_t& config): seed_func([seed]
{
return seed; return seed;
}) })
{ {
@ -334,16 +341,16 @@ namespace blt::gp
void create_next_generation() void create_next_generation()
{ {
#ifdef BLT_TRACK_ALLOCATIONS #ifdef BLT_TRACK_ALLOCATIONS
auto gen_alloc = blt::gp::tracker.start_measurement(); auto gen_alloc = blt::gp::tracker.start_measurement();
#endif #endif
// should already be empty // should already be empty
thread_helper.next_gen_left.store(selection_probabilities.replacement_amount.value_or(config.population_size), std::memory_order_release); thread_helper.next_gen_left.store(selection_probabilities.replacement_amount.value_or(config.population_size), std::memory_order_release);
(*thread_execution_service)(0); (*thread_execution_service)(0);
#ifdef BLT_TRACK_ALLOCATIONS #ifdef BLT_TRACK_ALLOCATIONS
blt::gp::tracker.stop_measurement(gen_alloc); blt::gp::tracker.stop_measurement(gen_alloc);
gen_alloc.pretty_print("Generation"); gen_alloc.pretty_print("Generation");
#endif #endif
} }
void next_generation() void next_generation()
@ -354,11 +361,11 @@ namespace blt::gp
void evaluate_fitness() void evaluate_fitness()
{ {
#ifdef BLT_TRACK_ALLOCATIONS #ifdef BLT_TRACK_ALLOCATIONS
auto fitness_alloc = blt::gp::tracker.start_measurement(); auto fitness_alloc = blt::gp::tracker.start_measurement();
#endif #endif
evaluate_fitness_internal(); evaluate_fitness_internal();
#ifdef BLT_TRACK_ALLOCATIONS #ifdef BLT_TRACK_ALLOCATIONS
blt::gp::tracker.stop_measurement(fitness_alloc); blt::gp::tracker.stop_measurement(fitness_alloc);
fitness_alloc.pretty_print("Fitness"); fitness_alloc.pretty_print("Fitness");
evaluation_calls.call(); evaluation_calls.call();
@ -367,7 +374,7 @@ namespace blt::gp
{ {
evaluation_allocations.call(fitness_alloc.getAllocatedByteDifference()); evaluation_allocations.call(fitness_alloc.getAllocatedByteDifference());
} }
#endif #endif
} }
void reset_program(type_id root_type, bool eval_fitness_now = true) void reset_program(type_id root_type, bool eval_fitness_now = true)
@ -420,7 +427,8 @@ namespace blt::gp
{ {
BLT_INFO("Starting generational with single thread variant!"); BLT_INFO("Starting generational with single thread variant!");
thread_execution_service = std::unique_ptr<std::function<void(size_t)>>(new std::function( thread_execution_service = std::unique_ptr<std::function<void(size_t)>>(new std::function(
[this, &fitness_function, &crossover_selection, &mutation_selection, &reproduction_selection](size_t) { [this, &fitness_function, &crossover_selection, &mutation_selection, &reproduction_selection](size_t)
{
single_threaded_fitness_eval<FitnessFunc>()(fitness_function); single_threaded_fitness_eval<FitnessFunc>()(fitness_function);
if (thread_helper.next_gen_left > 0) if (thread_helper.next_gen_left > 0)
@ -454,12 +462,14 @@ namespace blt::gp
thread_helper.next_gen_left = 0; thread_helper.next_gen_left = 0;
} }
})); }));
} else }
else
{ {
BLT_INFO("Starting generational thread execution service!"); BLT_INFO("Starting generational thread execution service!");
std::scoped_lock lock(thread_helper.thread_function_control); std::scoped_lock lock(thread_helper.thread_function_control);
thread_execution_service = std::unique_ptr<std::function<void(size_t)>>(new std::function( thread_execution_service = std::unique_ptr<std::function<void(size_t)>>(new std::function(
[this, &fitness_function, &crossover_selection, &mutation_selection, &reproduction_selection](const size_t id) { [this, &fitness_function, &crossover_selection, &mutation_selection, &reproduction_selection](const size_t id)
{
thread_helper.barrier.wait(); thread_helper.barrier.wait();
multi_threaded_fitness_eval<FitnessFunc>()(fitness_function, id); multi_threaded_fitness_eval<FitnessFunc>()(fitness_function, id);
@ -498,7 +508,8 @@ namespace blt::gp
{ {
size = std::min(end, config.evaluation_size); size = std::min(end, config.evaluation_size);
begin = end - size; begin = end - size;
} while (!thread_helper.next_gen_left.compare_exchange_weak( }
while (!thread_helper.next_gen_left.compare_exchange_weak(
end, end - size, std::memory_order::memory_order_relaxed, std::memory_order::memory_order_relaxed)); end, end - size, std::memory_order::memory_order_relaxed, std::memory_order::memory_order_relaxed));
while (begin != end) while (begin != end)
@ -517,8 +528,14 @@ namespace blt::gp
thread_helper.thread_function_condition.notify_all(); thread_helper.thread_function_condition.notify_all();
} }
if (eval_fitness_now) if (eval_fitness_now)
{
BLT_ASSERT(
!current_pop.get_individuals().empty() && current_pop.get_individuals().size() == config.population_size &&
"Attempted to evaluate fitness but population was empty. Did you forget to call generate_initial_population()?" &&
"You can also pass false to the function to prevent immediate fitness evaluation");
evaluate_fitness_internal(); evaluate_fitness_internal();
} }
}
template <typename FitnessFunc, typename SelectionStrat, typename Crossover, typename Mutation, typename Reproduction> template <typename FitnessFunc, typename SelectionStrat, typename Crossover, typename Mutation, typename Reproduction>
void setup_steady_state_evaluation(FitnessFunc& fitness_function, SelectionStrat& replacement_strategy, size_t replacement_amount, void setup_steady_state_evaluation(FitnessFunc& fitness_function, SelectionStrat& replacement_strategy, size_t replacement_amount,
@ -530,7 +547,8 @@ namespace blt::gp
{ {
BLT_INFO("Starting steady state with single thread variant!"); BLT_INFO("Starting steady state with single thread variant!");
thread_execution_service = std::unique_ptr<std::function<void(size_t)>>(new std::function( thread_execution_service = std::unique_ptr<std::function<void(size_t)>>(new std::function(
[this, &fitness_function, &replacement_strategy, &crossover_selection, &mutation_selection, &reproduction_selection](size_t) { [this, &fitness_function, &replacement_strategy, &crossover_selection, &mutation_selection, &reproduction_selection](size_t)
{
single_threaded_fitness_eval<FitnessFunc>()(fitness_function); single_threaded_fitness_eval<FitnessFunc>()(fitness_function);
if (thread_helper.next_gen_left > 0) if (thread_helper.next_gen_left > 0)
@ -565,13 +583,15 @@ namespace blt::gp
thread_helper.next_gen_left = 0; thread_helper.next_gen_left = 0;
} }
})); }));
} else }
else
{ {
BLT_INFO("Starting steady state thread execution service!"); BLT_INFO("Starting steady state thread execution service!");
std::scoped_lock lock(thread_helper.thread_function_control); std::scoped_lock lock(thread_helper.thread_function_control);
thread_execution_service = std::unique_ptr<std::function<void(size_t)>>(new std::function( thread_execution_service = std::unique_ptr<std::function<void(size_t)>>(new std::function(
[this, &fitness_function, &replacement_strategy, &crossover_selection, &mutation_selection, &reproduction_selection]( [this, &fitness_function, &replacement_strategy, &crossover_selection, &mutation_selection, &reproduction_selection](
const size_t id) { const size_t id)
{
thread_helper.barrier.wait(); thread_helper.barrier.wait();
multi_threaded_fitness_eval<FitnessFunc>()(fitness_function, id); multi_threaded_fitness_eval<FitnessFunc>()(fitness_function, id);
@ -608,7 +628,8 @@ namespace blt::gp
do do
{ {
size = std::min(end, config.evaluation_size); size = std::min(end, config.evaluation_size);
} while (!thread_helper.next_gen_left.compare_exchange_weak( }
while (!thread_helper.next_gen_left.compare_exchange_weak(
end, end - size, std::memory_order::memory_order_relaxed, std::memory_order::memory_order_relaxed)); end, end - size, std::memory_order::memory_order_relaxed, std::memory_order::memory_order_relaxed));
while (size > 0) while (size > 0)
@ -627,8 +648,14 @@ namespace blt::gp
thread_helper.thread_function_condition.notify_all(); thread_helper.thread_function_condition.notify_all();
} }
if (eval_fitness_now) if (eval_fitness_now)
{
BLT_ASSERT(
!current_pop.get_individuals().empty() && current_pop.get_individuals().size() == config.population_size &&
"Attempted to evaluate fitness but population was empty. Did you forget to call generate_initial_population()?" &&
"You can also pass false to the function to prevent immediate fitness evaluation");
evaluate_fitness_internal(); evaluate_fitness_internal();
} }
}
[[nodiscard]] bool should_terminate() const [[nodiscard]] bool should_terminate() const
{ {
@ -764,7 +791,8 @@ namespace blt::gp
for (const auto& [index, value] : enumerate(current_pop.get_individuals())) for (const auto& [index, value] : enumerate(current_pop.get_individuals()))
values.emplace_back(index, value.fitness.adjusted_fitness); values.emplace_back(index, value.fitness.adjusted_fitness);
std::sort(values.begin(), values.end(), [](const auto& a, const auto& b) { std::sort(values.begin(), values.end(), [](const auto& a, const auto& b)
{
return a.second > b.second; return a.second > b.second;
}); });
@ -780,7 +808,8 @@ namespace blt::gp
auto get_best_trees() auto get_best_trees()
{ {
return convert_array<std::array<std::reference_wrapper<individual_t>, size>>(get_best_indexes<size>(), return convert_array<std::array<std::reference_wrapper<individual_t>, size>>(get_best_indexes<size>(),
[this](auto&& arr, size_t index) -> tree_t& { [this](auto&& arr, size_t index) -> tree_t&
{
return current_pop.get_individuals()[arr[index]].tree; return current_pop.get_individuals()[arr[index]].tree;
}, std::make_integer_sequence<size_t, size>()); }, std::make_integer_sequence<size_t, size>());
} }
@ -789,7 +818,8 @@ namespace blt::gp
auto get_best_individuals() auto get_best_individuals()
{ {
return convert_array<std::array<std::reference_wrapper<individual_t>, size>>(get_best_indexes<size>(), return convert_array<std::array<std::reference_wrapper<individual_t>, size>>(get_best_indexes<size>(),
[this](auto&& arr, size_t index) -> individual_t& { [this](auto&& arr, size_t index) -> individual_t&
{
return current_pop.get_individuals()[arr[index]]; return current_pop.get_individuals()[arr[index]];
}, std::make_integer_sequence<size_t, size>()); }, std::make_integer_sequence<size_t, size>());
} }
@ -806,7 +836,8 @@ namespace blt::gp
template <typename FitnessFunc> template <typename FitnessFunc>
auto single_threaded_fitness_eval() auto single_threaded_fitness_eval()
{ {
return [this](FitnessFunc& fitness_function) { return [this](FitnessFunc& fitness_function)
{
if (thread_helper.evaluation_left > 0) if (thread_helper.evaluation_left > 0)
{ {
current_stats.normalized_fitness.clear(); current_stats.normalized_fitness.clear();
@ -830,7 +861,8 @@ namespace blt::gp
template <typename FitnessFunc> template <typename FitnessFunc>
auto multi_threaded_fitness_eval() auto multi_threaded_fitness_eval()
{ {
return [this](FitnessFunc& fitness_function, size_t thread_id) { return [this](FitnessFunc& fitness_function, size_t thread_id)
{
if (thread_helper.evaluation_left > 0) if (thread_helper.evaluation_left > 0)
{ {
thread_helper.barrier.wait(); thread_helper.barrier.wait();
@ -843,7 +875,8 @@ namespace blt::gp
{ {
size = std::min(end, config.evaluation_size); size = std::min(end, config.evaluation_size);
begin = end - size; begin = end - size;
} while (!thread_helper.evaluation_left.compare_exchange_weak(end, end - size, std::memory_order::memory_order_relaxed, }
while (!thread_helper.evaluation_left.compare_exchange_weak(end, end - size, std::memory_order::memory_order_relaxed,
std::memory_order::memory_order_relaxed)); std::memory_order::memory_order_relaxed));
perform_fitness_function(begin, end, fitness_function); perform_fitness_function(begin, end, fitness_function);
} }
@ -873,7 +906,8 @@ namespace blt::gp
{ {
if (fitness_function(ind.tree, ind.fitness, i)) if (fitness_function(ind.tree, ind.fitness, i))
fitness_should_exit = true; fitness_should_exit = true;
} else }
else
{ {
fitness_function(ind.tree, ind.fitness, i); fitness_function(ind.tree, ind.fitness, i);
} }
@ -881,17 +915,20 @@ namespace blt::gp
auto old_best = current_stats.best_fitness.load(std::memory_order_relaxed); auto old_best = current_stats.best_fitness.load(std::memory_order_relaxed);
while (ind.fitness.adjusted_fitness > old_best && !current_stats.best_fitness.compare_exchange_weak( while (ind.fitness.adjusted_fitness > old_best && !current_stats.best_fitness.compare_exchange_weak(
old_best, ind.fitness.adjusted_fitness, std::memory_order_relaxed, std::memory_order_relaxed)) old_best, ind.fitness.adjusted_fitness, std::memory_order_relaxed, std::memory_order_relaxed))
{} {
}
auto old_worst = current_stats.worst_fitness.load(std::memory_order_relaxed); auto old_worst = current_stats.worst_fitness.load(std::memory_order_relaxed);
while (ind.fitness.adjusted_fitness < old_worst && !current_stats.worst_fitness.compare_exchange_weak( while (ind.fitness.adjusted_fitness < old_worst && !current_stats.worst_fitness.compare_exchange_weak(
old_worst, ind.fitness.adjusted_fitness, std::memory_order_relaxed, std::memory_order_relaxed)) old_worst, ind.fitness.adjusted_fitness, std::memory_order_relaxed, std::memory_order_relaxed))
{} {
}
auto old_overall = current_stats.overall_fitness.load(std::memory_order_relaxed); auto old_overall = current_stats.overall_fitness.load(std::memory_order_relaxed);
while (!current_stats.overall_fitness.compare_exchange_weak(old_overall, ind.fitness.adjusted_fitness + old_overall, while (!current_stats.overall_fitness.compare_exchange_weak(old_overall, ind.fitness.adjusted_fitness + old_overall,
std::memory_order_relaxed, std::memory_order_relaxed)) std::memory_order_relaxed, std::memory_order_relaxed))
{} {
}
} }
} }
@ -903,9 +940,9 @@ namespace blt::gp
auto ptr = c2; auto ptr = c2;
if (ptr == nullptr) if (ptr == nullptr)
ptr = &tree_t::get_thread_local(*this); ptr = &tree_t::get_thread_local(*this);
#ifdef BLT_TRACK_ALLOCATIONS #ifdef BLT_TRACK_ALLOCATIONS
auto state = tracker.start_measurement_thread_local(); auto state = tracker.start_measurement_thread_local();
#endif #endif
const tree_t* p1; const tree_t* p1;
const tree_t* p2; const tree_t* p2;
size_t runs = 0; size_t runs = 0;
@ -922,11 +959,12 @@ namespace blt::gp
if (++runs >= config.crossover.get().get_config().max_crossover_iterations) if (++runs >= config.crossover.get().get_config().max_crossover_iterations)
return 0; return 0;
#ifdef BLT_TRACK_ALLOCATIONS #ifdef BLT_TRACK_ALLOCATIONS
crossover_calls.value(1); crossover_calls.value(1);
#endif #endif
} while (!config.crossover.get().apply(*this, *p1, *p2, c1, *ptr)); }
#ifdef BLT_TRACK_ALLOCATIONS while (!config.crossover.get().apply(*this, *p1, *p2, c1, *ptr));
#ifdef BLT_TRACK_ALLOCATIONS
tracker.stop_measurement_thread_local(state); tracker.stop_measurement_thread_local(state);
crossover_calls.call(); crossover_calls.call();
if (state.getAllocatedByteDifference() != 0) if (state.getAllocatedByteDifference() != 0)
@ -934,7 +972,7 @@ namespace blt::gp
crossover_allocations.call(state.getAllocatedByteDifference()); crossover_allocations.call(state.getAllocatedByteDifference());
crossover_allocations.set_value(std::max(crossover_allocations.get_value(), state.getAllocatedByteDifference())); crossover_allocations.set_value(std::max(crossover_allocations.get_value(), state.getAllocatedByteDifference()));
} }
#endif #endif
if (c2 == nullptr) if (c2 == nullptr)
{ {
tree_t::get_thread_local(*this).clear(*this); tree_t::get_thread_local(*this).clear(*this);
@ -944,20 +982,21 @@ namespace blt::gp
} }
if (get_random().choice(selection_probabilities.mutation_chance)) if (get_random().choice(selection_probabilities.mutation_chance))
{ {
#ifdef BLT_TRACK_ALLOCATIONS #ifdef BLT_TRACK_ALLOCATIONS
auto state = tracker.start_measurement_thread_local(); auto state = tracker.start_measurement_thread_local();
#endif #endif
// mutation // mutation
const tree_t* p; const tree_t* p;
do do
{ {
p = &mutation.select(*this, current_pop); p = &mutation.select(*this, current_pop);
c1.copy_fast(*p); c1.copy_fast(*p);
#ifdef BLT_TRACK_ALLOCATIONS #ifdef BLT_TRACK_ALLOCATIONS
mutation_calls.value(1); mutation_calls.value(1);
#endif #endif
} while (!config.mutator.get().apply(*this, *p, c1)); }
#ifdef BLT_TRACK_ALLOCATIONS while (!config.mutator.get().apply(*this, *p, c1));
#ifdef BLT_TRACK_ALLOCATIONS
tracker.stop_measurement_thread_local(state); tracker.stop_measurement_thread_local(state);
mutation_calls.call(); mutation_calls.call();
if (state.getAllocationDifference() != 0) if (state.getAllocationDifference() != 0)
@ -965,17 +1004,17 @@ namespace blt::gp
mutation_allocations.call(state.getAllocatedByteDifference()); mutation_allocations.call(state.getAllocatedByteDifference());
mutation_allocations.set_value(std::max(mutation_allocations.get_value(), state.getAllocatedByteDifference())); mutation_allocations.set_value(std::max(mutation_allocations.get_value(), state.getAllocatedByteDifference()));
} }
#endif #endif
return 1; return 1;
} }
if (selection_probabilities.reproduction_chance > 0) if (selection_probabilities.reproduction_chance > 0)
{ {
#ifdef BLT_TRACK_ALLOCATIONS #ifdef BLT_TRACK_ALLOCATIONS
auto state = tracker.start_measurement_thread_local(); auto state = tracker.start_measurement_thread_local();
#endif #endif
// reproduction // reproduction
c1.copy_fast(reproduction.select(*this, current_pop)); c1.copy_fast(reproduction.select(*this, current_pop));
#ifdef BLT_TRACK_ALLOCATIONS #ifdef BLT_TRACK_ALLOCATIONS
tracker.stop_measurement_thread_local(state); tracker.stop_measurement_thread_local(state);
reproduction_calls.call(); reproduction_calls.call();
reproduction_calls.value(1); reproduction_calls.value(1);
@ -984,7 +1023,7 @@ namespace blt::gp
reproduction_allocations.call(state.getAllocatedByteDifference()); reproduction_allocations.call(state.getAllocatedByteDifference());
reproduction_allocations.set_value(std::max(reproduction_allocations.get_value(), state.getAllocatedByteDifference())); reproduction_allocations.set_value(std::max(reproduction_allocations.get_value(), state.getAllocatedByteDifference()));
} }
#endif #endif
return 1; return 1;
} }
@ -1061,7 +1100,8 @@ namespace blt::gp
blt::barrier_t barrier; blt::barrier_t barrier;
explicit concurrency_storage(blt::size_t threads): barrier(threads, lifetime_over) explicit concurrency_storage(blt::size_t threads): barrier(threads, lifetime_over)
{} {
}
} thread_helper{config.threads == 0 ? std::thread::hardware_concurrency() : config.threads}; } thread_helper{config.threads == 0 ? std::thread::hardware_concurrency() : config.threads};
std::unique_ptr<std::function<void(blt::size_t)>> thread_execution_service = nullptr; std::unique_ptr<std::function<void(blt::size_t)>> thread_execution_service = nullptr;

16
include/blt/gp/tree.h
View File

@ -88,6 +88,8 @@ namespace blt::gp
return m_flags; return m_flags;
} }
friend bool operator==(const op_container_t& a, const op_container_t& b);
private: private:
size_t m_type_size; size_t m_type_size;
operator_id m_id; operator_id m_id;
@ -625,6 +627,13 @@ namespace blt::gp
static tree_t& get_thread_local(gp_program& program); static tree_t& get_thread_local(gp_program& program);
friend bool operator==(const tree_t& a, const tree_t& b);
friend bool operator!=(const tree_t& a, const tree_t& b)
{
return !(a == b);
}
private: private:
void handle_operator_inserted(const op_container_t& op); void handle_operator_inserted(const op_container_t& op);
@ -755,6 +764,13 @@ namespace blt::gp
individual_t& operator=(const individual_t&) = delete; individual_t& operator=(const individual_t&) = delete;
individual_t& operator=(individual_t&&) = default; individual_t& operator=(individual_t&&) = default;
friend bool operator==(const individual_t& a, const individual_t& b);
friend bool operator!=(const individual_t& a, const individual_t& b)
{
return !(a == b);
}
}; };
class population_t class population_t

35
src/tree.cpp
View File

@ -717,12 +717,12 @@ namespace blt::gp
operator_id id; operator_id id;
std::memcpy(&id, in, sizeof(operator_id)); std::memcpy(&id, in, sizeof(operator_id));
in += sizeof(operator_id); in += sizeof(operator_id);
operations.push_back({ operations.emplace_back(
m_program->get_typesystem().get_type(m_program->get_operator_info(id).return_type).size(), m_program->get_typesystem().get_type(m_program->get_operator_info(id).return_type).size(),
id, id,
m_program->is_operator_ephemeral(id), m_program->is_operator_ephemeral(id),
m_program->get_operator_flags(id) m_program->get_operator_flags(id)
}); );
} }
size_t val_size; size_t val_size;
std::memcpy(&val_size, in, sizeof(size_t)); std::memcpy(&val_size, in, sizeof(size_t));
@ -740,17 +740,17 @@ namespace blt::gp
{ {
operator_id id; operator_id id;
BLT_ASSERT(file.read(&id, sizeof(operator_id)) == sizeof(operator_id)); BLT_ASSERT(file.read(&id, sizeof(operator_id)) == sizeof(operator_id));
operations.push_back({ operations.emplace_back(
m_program->get_typesystem().get_type(m_program->get_operator_info(id).return_type).size(), m_program->get_typesystem().get_type(m_program->get_operator_info(id).return_type).size(),
id, id,
m_program->is_operator_ephemeral(id), m_program->is_operator_ephemeral(id),
m_program->get_operator_flags(id) m_program->get_operator_flags(id)
}); );
} }
size_t val_size; size_t bytes_in_head;
BLT_ASSERT(file.read(&val_size, sizeof(size_t)) == sizeof(size_t)); BLT_ASSERT(file.read(&bytes_in_head, sizeof(size_t)) == sizeof(size_t));
values.resize(val_size); values.resize(bytes_in_head);
BLT_ASSERT(file.read(values.data(), val_size) == val_size); BLT_ASSERT(file.read(values.data(), bytes_in_head) == bytes_in_head);
} }
void tree_t::modify_operator(const size_t point, operator_id new_id, std::optional<type_id> return_type) void tree_t::modify_operator(const size_t point, operator_id new_id, std::optional<type_id> return_type)
@ -787,4 +787,23 @@ namespace blt::gp
handle_operator_inserted(operations[point]); handle_operator_inserted(operations[point]);
} }
} }
bool operator==(const tree_t& a, const tree_t& b)
{
if (a.operations.size() != b.operations.size())
return false;
if (a.values.bytes_in_head() != b.values.bytes_in_head())
return false;
return std::equal(a.operations.begin(), a.operations.end(), b.operations.begin());
}
bool operator==(const op_container_t& a, const op_container_t& b)
{
return a.id() == b.id();
}
bool operator==(const individual_t& a, const individual_t& b)
{
return a.tree == b.tree;
}
} }

37
tests/serialization_test.cpp
View File

@ -15,9 +15,15 @@
* You should have received a copy of the GNU General Public License * You should have received a copy of the GNU General Public License
* along with this program. If not, see <https://www.gnu.org/licenses/>. * along with this program. If not, see <https://www.gnu.org/licenses/>.
*/ */
#include <filesystem>
#include "../examples/symbolic_regression.h" #include "../examples/symbolic_regression.h"
#include <blt/gp/program.h> #include <blt/gp/program.h>
#include <blt/logging/logging.h> #include <blt/logging/logging.h>
#include <ostream>
#include <istream>
#include <fstream>
#include <blt/fs/stream_wrappers.h>
using namespace blt::gp; using namespace blt::gp;
@ -35,7 +41,7 @@ prog_config_t config = prog_config_t()
.set_reproduction_chance(0.1) .set_reproduction_chance(0.1)
.set_max_generations(50) .set_max_generations(50)
.set_pop_size(500) .set_pop_size(500)
.set_thread_count(1); .set_thread_count(0);
example::symbolic_regression_t regression{691ul, config}; example::symbolic_regression_t regression{691ul, config};
@ -84,11 +90,16 @@ bool fitness_function(const tree_t& current_tree, fitness_t& fitness, size_t)
int main() int main()
{ {
operator_builder<context> builder{}; operator_builder<context> builder{};
builder.build(addf, subf, mulf, pro_divf, op_sinf, op_cosf, op_expf, op_logf, litf, op_xf); const auto& operators = builder.build(addf, subf, mulf, pro_divf, op_sinf, op_cosf, op_expf, op_logf, litf, op_xf);
regression.get_program().set_operations(builder.grab()); regression.get_program().set_operations(operators);
auto& program = regression.get_program(); auto& program = regression.get_program();
static auto sel = select_tournament_t{}; static auto sel = select_tournament_t{};
gp_program test_program{691};
test_program.set_operations(operators);
test_program.setup_generational_evaluation(fitness_function, sel, sel, sel, false);
program.generate_initial_population(program.get_typesystem().get_type<float>().id()); program.generate_initial_population(program.get_typesystem().get_type<float>().id());
program.setup_generational_evaluation(fitness_function, sel, sel, sel); program.setup_generational_evaluation(fitness_function, sel, sel, sel);
while (!program.should_terminate()) while (!program.should_terminate())
@ -100,5 +111,25 @@ int main()
program.next_generation(); program.next_generation();
BLT_TRACE("Evaluate Fitness"); BLT_TRACE("Evaluate Fitness");
program.evaluate_fitness(); program.evaluate_fitness();
{
std::filesystem::remove("serialization_test.data");
std::ofstream stream{"serialization_test.data", std::ios::binary};
blt::fs::fstream_writer_t writer{stream};
program.save_generation(writer);
}
{
std::ifstream stream{"serialization_test.data", std::ios::binary};
blt::fs::fstream_reader_t reader{stream};
test_program.load_generation(reader);
}
// do a quick validation check
for (const auto& [saved, loaded] : blt::zip(program.get_current_pop(), test_program.get_current_pop()))
{
if (saved.tree != loaded.tree)
{
BLT_ERROR("Serializer Failed to correctly serialize tree to disk, trees are not equal!");
std::exit(1);
}
}
} }
} }