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Brett 2025-04-17 17:45:32 -04:00
parent 29d8efe18f
commit dcefa93d29
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<option name="/Default/CodeInspection/Highlighting/InspectionSeverities/=CppRedundantInlineSpecifier/@EntryIndexedValue" value="HINT" type="string" />
<option name="/Default/CodeInspection/Highlighting/InspectionSeverities/=CppRedundantLambdaParameterList/@EntryIndexedValue" value="HINT" type="string" />
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<option name="/Default/CodeInspection/Highlighting/InspectionSeverities/=CppRedundantStaticSpecifierOnMemberAllocationFunction/@EntryIndexedValue" value="HINT" type="string" />
<option name="/Default/CodeInspection/Highlighting/InspectionSeverities/=CppRedundantStaticSpecifierOnThreadLocalLocalVariable/@EntryIndexedValue" value="HINT" type="string" />
<option name="/Default/CodeInspection/Highlighting/InspectionSeverities/=CppRedundantTemplateArguments/@EntryIndexedValue" value="HINT" type="string" />
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<option name="/Default/CodeInspection/Highlighting/InspectionSeverities/=CppStaticDataMemberInUnnamedStruct/@EntryIndexedValue" value="WARNING" type="string" />
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<option name="/Default/CodeInspection/Highlighting/InspectionSeverities/=CppTabsAreDisallowed/@EntryIndexedValue" value="DO_NOT_SHOW" type="string" />
<option name="/Default/CodeInspection/Highlighting/InspectionSeverities/=CppTemplateArgumentsCanBeDeduced/@EntryIndexedValue" value="HINT" type="string" />
<option name="/Default/CodeInspection/Highlighting/InspectionSeverities/=CppTemplateParameterNeverUsed/@EntryIndexedValue" value="HINT" type="string" />
<option name="/Default/CodeInspection/Highlighting/InspectionSeverities/=CppTemplateParameterShadowing/@EntryIndexedValue" value="WARNING" type="string" />
<option name="/Default/CodeInspection/Highlighting/InspectionSeverities/=CppThrowExpressionCanBeReplacedWithRethrow/@EntryIndexedValue" value="WARNING" type="string" />
<option name="/Default/CodeInspection/Highlighting/InspectionSeverities/=CppTooWideScope/@EntryIndexedValue" value="SUGGESTION" type="string" />
<option name="/Default/CodeInspection/Highlighting/InspectionSeverities/=CppTooWideScopeInitStatement/@EntryIndexedValue" value="HINT" type="string" />
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<option name="/Default/CodeInspection/Highlighting/InspectionSeverities/=CppUninitializedDependentBaseClass/@EntryIndexedValue" value="WARNING" type="string" />
<option name="/Default/CodeInspection/Highlighting/InspectionSeverities/=CppUninitializedNonStaticDataMember/@EntryIndexedValue" value="WARNING" type="string" />
<option name="/Default/CodeInspection/Highlighting/InspectionSeverities/=CppUnionMemberOfReferenceType/@EntryIndexedValue" value="WARNING" type="string" />
<option name="/Default/CodeInspection/Highlighting/InspectionSeverities/=CppUnmatchedPragmaEndRegionDirective/@EntryIndexedValue" value="WARNING" type="string" />
<option name="/Default/CodeInspection/Highlighting/InspectionSeverities/=CppUnmatchedPragmaRegionDirective/@EntryIndexedValue" value="WARNING" type="string" />
<option name="/Default/CodeInspection/Highlighting/InspectionSeverities/=CppUnnamedNamespaceInHeaderFile/@EntryIndexedValue" value="WARNING" type="string" />
<option name="/Default/CodeInspection/Highlighting/InspectionSeverities/=CppUnnecessaryWhitespace/@EntryIndexedValue" value="DO_NOT_SHOW" type="string" />
<option name="/Default/CodeInspection/Highlighting/InspectionSeverities/=CppUnsignedZeroComparison/@EntryIndexedValue" value="WARNING" type="string" />
<option name="/Default/CodeInspection/Highlighting/InspectionSeverities/=CppUnusedIncludeDirective/@EntryIndexedValue" value="WARNING" type="string" />
<option name="/Default/CodeInspection/Highlighting/InspectionSeverities/=CppUseAlgorithmWithCount/@EntryIndexedValue" value="SUGGESTION" type="string" />
<option name="/Default/CodeInspection/Highlighting/InspectionSeverities/=CppUseAssociativeContains/@EntryIndexedValue" value="SUGGESTION" type="string" />
<option name="/Default/CodeInspection/Highlighting/InspectionSeverities/=CppUseAuto/@EntryIndexedValue" value="HINT" type="string" />
<option name="/Default/CodeInspection/Highlighting/InspectionSeverities/=CppUseAutoForNumeric/@EntryIndexedValue" value="HINT" type="string" />
<option name="/Default/CodeInspection/Highlighting/InspectionSeverities/=CppUseElementsView/@EntryIndexedValue" value="SUGGESTION" type="string" />
<option name="/Default/CodeInspection/Highlighting/InspectionSeverities/=CppUseEraseAlgorithm/@EntryIndexedValue" value="SUGGESTION" type="string" />
<option name="/Default/CodeInspection/Highlighting/InspectionSeverities/=CppUseFamiliarTemplateSyntaxForGenericLambdas/@EntryIndexedValue" value="SUGGESTION" type="string" />
<option name="/Default/CodeInspection/Highlighting/InspectionSeverities/=CppUseRangeAlgorithm/@EntryIndexedValue" value="SUGGESTION" type="string" />
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<option name="/Default/CodeInspection/Highlighting/InspectionSeverities/=CppUseTypeTraitAlias/@EntryIndexedValue" value="SUGGESTION" type="string" />
<option name="/Default/CodeInspection/Highlighting/InspectionSeverities/=CppUserDefinedLiteralSuffixDoesNotStartWithUnderscore/@EntryIndexedValue" value="WARNING" type="string" />
<option name="/Default/CodeInspection/Highlighting/InspectionSeverities/=CppUsingResultOfAssignmentAsCondition/@EntryIndexedValue" value="WARNING" type="string" />
<option name="/Default/CodeInspection/Highlighting/InspectionSeverities/=CppVariableCanBeMadeConstexpr/@EntryIndexedValue" value="SUGGESTION" type="string" />
<option name="/Default/CodeInspection/Highlighting/InspectionSeverities/=CppVirtualFunctionCallInsideCtor/@EntryIndexedValue" value="WARNING" type="string" />
<option name="/Default/CodeInspection/Highlighting/InspectionSeverities/=CppVirtualFunctionInFinalClass/@EntryIndexedValue" value="WARNING" type="string" />
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<option name="/Default/CodeInspection/Highlighting/InspectionSeverities/=CppWarningDirective/@EntryIndexedValue" value="WARNING" type="string" />
<option name="/Default/CodeInspection/Highlighting/InspectionSeverities/=CppWrongIncludesOrder/@EntryIndexedValue" value="HINT" type="string" />
<option name="/Default/CodeInspection/Highlighting/InspectionSeverities/=CppWrongSlashesInIncludeDirective/@EntryIndexedValue" value="HINT" type="string" />
<option name="/Default/CodeInspection/Highlighting/InspectionSeverities/=CppZeroConstantCanBeReplacedWithNullptr/@EntryIndexedValue" value="SUGGESTION" type="string" />
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<option name="/Default/CodeStyle/Naming/CppNaming/Rules/=Class_0020and_0020struct_0020fields/@EntryIndexedValue" value="&lt;NamingElement Priority=&quot;11&quot;&gt;&lt;Descriptor Static=&quot;Indeterminate&quot; Constexpr=&quot;Indeterminate&quot; Const=&quot;Indeterminate&quot; Volatile=&quot;Indeterminate&quot; Accessibility=&quot;NOT_APPLICABLE&quot;&gt;&lt;type Name=&quot;class field&quot; /&gt;&lt;type Name=&quot;struct field&quot; /&gt;&lt;/Descriptor&gt;&lt;Policy Inspect=&quot;True&quot; WarnAboutPrefixesAndSuffixes=&quot;False&quot; Prefix=&quot;m_&quot; Suffix=&quot;&quot; Style=&quot;aa_bb&quot; /&gt;&lt;/NamingElement&gt;" type="string" /> <option name="/Default/CodeStyle/Naming/CppNaming/Rules/=Class_0020and_0020struct_0020fields/@EntryIndexedValue" value="&lt;NamingElement Priority=&quot;11&quot;&gt;&lt;Descriptor Static=&quot;Indeterminate&quot; Constexpr=&quot;Indeterminate&quot; Const=&quot;Indeterminate&quot; Volatile=&quot;Indeterminate&quot; Accessibility=&quot;NOT_APPLICABLE&quot;&gt;&lt;type Name=&quot;class field&quot; /&gt;&lt;type Name=&quot;struct field&quot; /&gt;&lt;/Descriptor&gt;&lt;Policy Inspect=&quot;True&quot; WarnAboutPrefixesAndSuffixes=&quot;False&quot; Prefix=&quot;m_&quot; Suffix=&quot;&quot; Style=&quot;aa_bb&quot; /&gt;&lt;/NamingElement&gt;" type="string" />
<option name="/Default/CodeStyle/Naming/CppNaming/Rules/=Enums/@EntryIndexedValue" value="&lt;NamingElement Priority=&quot;3&quot;&gt;&lt;Descriptor Static=&quot;Indeterminate&quot; Constexpr=&quot;Indeterminate&quot; Const=&quot;Indeterminate&quot; Volatile=&quot;Indeterminate&quot; Accessibility=&quot;NOT_APPLICABLE&quot;&gt;&lt;type Name=&quot;enum&quot; /&gt;&lt;/Descriptor&gt;&lt;Policy Inspect=&quot;True&quot; WarnAboutPrefixesAndSuffixes=&quot;False&quot; Prefix=&quot;&quot; Suffix=&quot;&quot; Style=&quot;AA_BB&quot; /&gt;&lt;/NamingElement&gt;" type="string" /> <option name="/Default/CodeStyle/Naming/CppNaming/Rules/=Enums/@EntryIndexedValue" value="&lt;NamingElement Priority=&quot;3&quot;&gt;&lt;Descriptor Static=&quot;Indeterminate&quot; Constexpr=&quot;Indeterminate&quot; Const=&quot;Indeterminate&quot; Volatile=&quot;Indeterminate&quot; Accessibility=&quot;NOT_APPLICABLE&quot;&gt;&lt;type Name=&quot;enum&quot; /&gt;&lt;/Descriptor&gt;&lt;Policy Inspect=&quot;True&quot; WarnAboutPrefixesAndSuffixes=&quot;False&quot; Prefix=&quot;&quot; Suffix=&quot;&quot; Style=&quot;AA_BB&quot; /&gt;&lt;/NamingElement&gt;" type="string" />
</component> </component>

2
CMakeLists.txt
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@ -27,7 +27,7 @@ macro(compile_options target_name)
sanitizers(${target_name}) sanitizers(${target_name})
endmacro() endmacro()
project(blt-gp VERSION 0.5.8) project(blt-gp VERSION 0.5.9)
include(CTest) include(CTest)

4
examples/rice_classification.h
View File

@ -116,8 +116,8 @@ namespace blt::gp::example
mutation_sel = &sel; mutation_sel = &sel;
if (reproduction_sel == nullptr) if (reproduction_sel == nullptr)
reproduction_sel = &sel; reproduction_sel = &sel;
program.generate_population(program.get_typesystem().get_type<float>().id(), fitness_function_ref, *crossover_sel, *mutation_sel, program.generate_initial_population(program.get_typesystem().get_type<float>().id());
*reproduction_sel); program.setup_generational_evaluation(fitness_function_ref, *crossover_sel, *mutation_sel, *reproduction_sel);
} }
void print_best(const size_t amount = 3) void print_best(const size_t amount = 3)

4
examples/src/rice_classification.cpp
View File

@ -21,7 +21,7 @@
#include <blt/gp/program.h> #include <blt/gp/program.h>
#include <blt/profiling/profiler_v2.h> #include <blt/profiling/profiler_v2.h>
#include <blt/gp/tree.h> #include <blt/gp/tree.h>
#include <blt/std/logging.h> #include <blt/logging/logging.h>
#include <blt/format/format.h> #include <blt/format/format.h>
#include <blt/parse/argparse.h> #include <blt/parse/argparse.h>
#include <iostream> #include <iostream>
@ -191,7 +191,7 @@ void blt::gp::example::rice_classification_t::load_rice_data(const std::string_v
training_cases.insert(training_cases.end(), c.begin(), c.end()); training_cases.insert(training_cases.end(), c.begin(), c.end());
training_cases.insert(training_cases.end(), o.begin(), o.end()); training_cases.insert(training_cases.end(), o.begin(), o.end());
std::shuffle(training_cases.begin(), training_cases.end(), program.get_random()); std::shuffle(training_cases.begin(), training_cases.end(), program.get_random());
BLT_INFO("Created testing set of size %ld, training set is of size %ld", testing_cases.size(), training_cases.size()); BLT_INFO("Created testing set of size {}, training set is of size {}", testing_cases.size(), training_cases.size());
} }
blt::gp::confusion_matrix_t blt::gp::example::rice_classification_t::test_individual(const individual_t& individual) const blt::gp::confusion_matrix_t blt::gp::example::rice_classification_t::test_individual(const individual_t& individual) const

1852
include/blt/gp/program.h
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File diff suppressed because it is too large Load Diff

16
include/blt/gp/tree.h
View File

@ -88,6 +88,8 @@ namespace blt::gp
return m_flags; return m_flags;
} }
friend bool operator==(const op_container_t& a, const op_container_t& b);
private: private:
size_t m_type_size; size_t m_type_size;
operator_id m_id; operator_id m_id;
@ -625,6 +627,13 @@ namespace blt::gp
static tree_t& get_thread_local(gp_program& program); static tree_t& get_thread_local(gp_program& program);
friend bool operator==(const tree_t& a, const tree_t& b);
friend bool operator!=(const tree_t& a, const tree_t& b)
{
return !(a == b);
}
private: private:
void handle_operator_inserted(const op_container_t& op); void handle_operator_inserted(const op_container_t& op);
@ -755,6 +764,13 @@ namespace blt::gp
individual_t& operator=(const individual_t&) = delete; individual_t& operator=(const individual_t&) = delete;
individual_t& operator=(individual_t&&) = default; individual_t& operator=(individual_t&&) = default;
friend bool operator==(const individual_t& a, const individual_t& b);
friend bool operator!=(const individual_t& a, const individual_t& b)
{
return !(a == b);
}
}; };
class population_t class population_t

35
src/tree.cpp
View File

@ -717,12 +717,12 @@ namespace blt::gp
operator_id id; operator_id id;
std::memcpy(&id, in, sizeof(operator_id)); std::memcpy(&id, in, sizeof(operator_id));
in += sizeof(operator_id); in += sizeof(operator_id);
operations.push_back({ operations.emplace_back(
m_program->get_typesystem().get_type(m_program->get_operator_info(id).return_type).size(), m_program->get_typesystem().get_type(m_program->get_operator_info(id).return_type).size(),
id, id,
m_program->is_operator_ephemeral(id), m_program->is_operator_ephemeral(id),
m_program->get_operator_flags(id) m_program->get_operator_flags(id)
}); );
} }
size_t val_size; size_t val_size;
std::memcpy(&val_size, in, sizeof(size_t)); std::memcpy(&val_size, in, sizeof(size_t));
@ -740,17 +740,17 @@ namespace blt::gp
{ {
operator_id id; operator_id id;
BLT_ASSERT(file.read(&id, sizeof(operator_id)) == sizeof(operator_id)); BLT_ASSERT(file.read(&id, sizeof(operator_id)) == sizeof(operator_id));
operations.push_back({ operations.emplace_back(
m_program->get_typesystem().get_type(m_program->get_operator_info(id).return_type).size(), m_program->get_typesystem().get_type(m_program->get_operator_info(id).return_type).size(),
id, id,
m_program->is_operator_ephemeral(id), m_program->is_operator_ephemeral(id),
m_program->get_operator_flags(id) m_program->get_operator_flags(id)
}); );
} }
size_t val_size; size_t bytes_in_head;
BLT_ASSERT(file.read(&val_size, sizeof(size_t)) == sizeof(size_t)); BLT_ASSERT(file.read(&bytes_in_head, sizeof(size_t)) == sizeof(size_t));
values.resize(val_size); values.resize(bytes_in_head);
BLT_ASSERT(file.read(values.data(), val_size) == val_size); BLT_ASSERT(file.read(values.data(), bytes_in_head) == bytes_in_head);
} }
void tree_t::modify_operator(const size_t point, operator_id new_id, std::optional<type_id> return_type) void tree_t::modify_operator(const size_t point, operator_id new_id, std::optional<type_id> return_type)
@ -787,4 +787,23 @@ namespace blt::gp
handle_operator_inserted(operations[point]); handle_operator_inserted(operations[point]);
} }
} }
bool operator==(const tree_t& a, const tree_t& b)
{
if (a.operations.size() != b.operations.size())
return false;
if (a.values.bytes_in_head() != b.values.bytes_in_head())
return false;
return std::equal(a.operations.begin(), a.operations.end(), b.operations.begin());
}
bool operator==(const op_container_t& a, const op_container_t& b)
{
return a.id() == b.id();
}
bool operator==(const individual_t& a, const individual_t& b)
{
return a.tree == b.tree;
}
} }

37
tests/serialization_test.cpp
View File

@ -15,9 +15,15 @@
* You should have received a copy of the GNU General Public License * You should have received a copy of the GNU General Public License
* along with this program. If not, see <https://www.gnu.org/licenses/>. * along with this program. If not, see <https://www.gnu.org/licenses/>.
*/ */
#include <filesystem>
#include "../examples/symbolic_regression.h" #include "../examples/symbolic_regression.h"
#include <blt/gp/program.h> #include <blt/gp/program.h>
#include <blt/logging/logging.h> #include <blt/logging/logging.h>
#include <ostream>
#include <istream>
#include <fstream>
#include <blt/fs/stream_wrappers.h>
using namespace blt::gp; using namespace blt::gp;
@ -35,7 +41,7 @@ prog_config_t config = prog_config_t()
.set_reproduction_chance(0.1) .set_reproduction_chance(0.1)
.set_max_generations(50) .set_max_generations(50)
.set_pop_size(500) .set_pop_size(500)
.set_thread_count(1); .set_thread_count(0);
example::symbolic_regression_t regression{691ul, config}; example::symbolic_regression_t regression{691ul, config};
@ -84,11 +90,16 @@ bool fitness_function(const tree_t& current_tree, fitness_t& fitness, size_t)
int main() int main()
{ {
operator_builder<context> builder{}; operator_builder<context> builder{};
builder.build(addf, subf, mulf, pro_divf, op_sinf, op_cosf, op_expf, op_logf, litf, op_xf); const auto& operators = builder.build(addf, subf, mulf, pro_divf, op_sinf, op_cosf, op_expf, op_logf, litf, op_xf);
regression.get_program().set_operations(builder.grab()); regression.get_program().set_operations(operators);
auto& program = regression.get_program(); auto& program = regression.get_program();
static auto sel = select_tournament_t{}; static auto sel = select_tournament_t{};
gp_program test_program{691};
test_program.set_operations(operators);
test_program.setup_generational_evaluation(fitness_function, sel, sel, sel, false);
program.generate_initial_population(program.get_typesystem().get_type<float>().id()); program.generate_initial_population(program.get_typesystem().get_type<float>().id());
program.setup_generational_evaluation(fitness_function, sel, sel, sel); program.setup_generational_evaluation(fitness_function, sel, sel, sel);
while (!program.should_terminate()) while (!program.should_terminate())
@ -100,5 +111,25 @@ int main()
program.next_generation(); program.next_generation();
BLT_TRACE("Evaluate Fitness"); BLT_TRACE("Evaluate Fitness");
program.evaluate_fitness(); program.evaluate_fitness();
{
std::filesystem::remove("serialization_test.data");
std::ofstream stream{"serialization_test.data", std::ios::binary};
blt::fs::fstream_writer_t writer{stream};
program.save_generation(writer);
}
{
std::ifstream stream{"serialization_test.data", std::ios::binary};
blt::fs::fstream_reader_t reader{stream};
test_program.load_generation(reader);
}
// do a quick validation check
for (const auto& [saved, loaded] : blt::zip(program.get_current_pop(), test_program.get_current_pop()))
{
if (saved.tree != loaded.tree)
{
BLT_ERROR("Serializer Failed to correctly serialize tree to disk, trees are not equal!");
std::exit(1);
}
}
} }
} }